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Where is the novoindex log?

Where does novoindex write its logfile? Is there a way to manually specify where to output the log file? I run it using a batch system and am thinking that the logfile may be getting stored in a temporary directory that gets removed after the job completes.

Hi Daniel,

It's just written to stdout so we typically run Novoindex like

novoindex hg19.nix *.fa >hg19.nix.log

Best, Colin


> Where does novoindex write its logfile? Is there a way to manually specify where to output the log file? I run it using a batch system and am thinking that the logfile may be getting stored in a temporary directory that gets removed after the job completes.

Thanks, that answers my question. :-)


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