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Forums > Support> geneMaskedGenome.fasta

Hi Illini

You will need to generate this file on your own. USeq has a tool called MaskExonsInFastaFiles(external link)

You need to have the UCSC Refflat gene table that you used to build the transcriptome database and your directory of genome fasta files. These can both be obtained from UCSC. Try this link(external link) to get the refFlat table file for rat.


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